AS-ALPS - Alternative Splicing Induced Alteration of Protein Structure | Tool name | AS-ALPS - Alternative Splicing Induced Alteration of Protein Structure |
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| URL | http://as-alps.nagahama-i-bio.ac.jp/ |
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| Important features | |
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| Citations | Shionyu M, Yamaguchi A, Shinoda K, Takahashi K, Go M. AS-ALPS: a database for
analyzing the effects of alternative splicing on protein structure, interaction
and network in human and mouse. Nucleic AcIDs Res. 2009 Jan;37(Database
issue):D305-9. Epub 2008 Nov 10. PubMed PMID: 19015123; PubMed Central PMCID:
PMC2686549.
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| Year of publication | 2009 |
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| Rank by usage frequency | 100 |
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| Comments | 1) Alternative Splicing type and position is given. 2) Uninformative transcripts can also be seen. 3) Splice site details include the position of the Alternative spliced region. |
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| Function | Exon detail, Exon detail: number, Exon detail: start/end, Exon detail: length, Exon detail direct information, Graphical display of transcripts, Types of alternative splice events, Splice site details, Predicted Protein sequences, Number of transcripts, Species, Finds alternative splicing in human, Finds alternative splicing in mouse, Finds alternative splicing in Arabidopsis, Finds alternative splicing in Drosophila, Finds alternative splicing in other species |
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| Category | Downloadable |
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| Input file format | Gene symbol, trancript ID and Entrez gene Id |
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| Output file format | |
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| Limitation | |
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